Hunter Runes and Locations - WoW SoD

For Alliance, you can loot a Goretusk Haunch from the Goretusks in the zone. As the text on the item implies, you can place these in the Coyote Dwelling on the west coast of Westfall to bait out Silvepur. The Rune drops from him.

For Horde, there is a Patrolling Cheetah that runs in a circle north of Camp Taurajo in The Barrens. If you place a trap in the Cheetah's path, it will run over the trap and become attack-able. The Rune drops from the Cheetah after you kill it.

This Rune drops from several named enemies around the world. There is one drop in each race's starting zone.

Dwarf: Fyodi in Dun Morogh.

Night Elf: Rageclaw in Teldrassil.

Orc and Troll: Sarkoth in the Valley of Trials.

Tauren: Arra'chea in Mulgore.

This Rune is obtained by finding one of the consumables that allows you to tame a critter. After successfully taming a critter, you can return to your class trainer (or an NPC next to it) in the same zone to receive this Rune. 

Dwarf: Rabbit Musk in Dun Morogh.

Night Elf: Deer Musk in Teldrassil.

Orc and Troll: Adder Pheromone in Durotar.

Tauren: Prairie Dog Musk in Mulgore.

As Alliance, there are currently two ways to obtain this Rune. Either kill the elite crocolisk Kackle in Loch Modan or travel to Darkshore and find a harpoon along the beach near the Sea Turtle corpses that are used for quests there. Once you have the harpoon, travel north to roughly (48,11) on your map out in the water and find the sea creature Paxnozz that swims around. Use the harpoon on him and kill him to loot the Rune.

As Horde, go to Ratchet and purchase a fishing harpoon from Kilxx there near the docks. Nearby in the water you'll find the shark Bruuz where you can use the harpoon on him and kill him to loot the Rune.

This Rune can be found in all of the starting zones for each Hunter race. In any of the zones, there will be a cave where you can loot some meat from the beasts nearby that will "bait out" a named mob inside the cave. Killing the enemy that spawns in the cave is where you can loot this Rune.

Dwarf: Bear Den at roughly (38,43) in Dun Morogh. Kill the boars nearby for the bait.

Night Elf: Bear Den at roughly (48,31) in Teldrassil. Kill the owls nearby for the bait.

Orc and Troll: Cat Dwelling at roughly (69,71) in Durotar. Kill the boars nearby for the bait.

Tauren: Cat Dwelling at roughly (36,56) in Mulgore. Kill the carrions nearby for the bait.

This Rune can be found in all of the starting zones for each Hunter race. In any of the zones, there is a "Rustling Bush" that spawns in the zone where if you cast Hunter's Mark on it, an enemy will appear. Kill the mob that spawns and loot the Rune.

Dwarf: The bush is found at roughly (29,49) in Dun Morogh.

Night Elf: The bush is found at roughly (46,46) in Teldrassil.

Orc and Troll: The bush is found at roughly (38,52) in Durotar.

Tauren: The bush is found at roughly (59,54) in Mulgore.

This Rune can be purchased from Grizzby in Ratchet for 5 gold. However, to unlock the purchase, you have to talk with him after reaching leveling 20 and then accepting and complete the three hand-in quests that he'll give you. These quests will require you to gather the following:

24x Fish Oil. These drop from Bluegill Oracles in the Wetlands.

20x Dark Iron Ordinance. These are dropped by the elite Dark Iron Dwarves in Dun Modr in the Wetlands.

16x Shredder Turbocharger s. You can get these by using the new Engineering item Shredder Autosalvage Unit to salavage the shredders in Stonetalon Mountains.

Travel to Deadwind Pass and speak to the Dalaran Agent found in Ariden's Camp. This agent will give you Ariden's Sigil which is used to provoke nearby Dark Riders to reveal themselves. You will know when you are near a Dark Rider as you will gain the buff Dark Presence when near one, but otherwise they are just disguised as regular NPCs. You must kill 7 different Dark Riders and loot the 7 relics. They are found scattered over both continents, but here is the recommended travel order.

The first Dark Rider to your starting point can be found in Deadwind Pass at (43, 29).

The second Dark Rider can be found at (69, 28) in the Swamp of Sorrows.

The third Dark Rider can be found in Duskwood at (22, 51).

The fourth Dark Rider can be found in The Badlands at (58, 54).

the fifth Dark Rider can be found in the Arathi Highlands at (60, 40).

Next we will need to head to Kalimdor, the sixth Dark Rider can be found at (52, 36) in the Barrens.

The 7th and final Dark Rider we need can be found in Desolace at (65, 25).

Return to the Dalaran Agent in Deadwind Pass with the 7 relics to receive the rune.

Travel to the Swamp of Sorrows and find Amaryllis Webb at (25,54) purchase the Entomology Starter Kit that she sells. Open the kit.

Travel to Stranglethorn Vale to (45,19) to find a tree stump. Look for a bug near it, and use the net to catch it.

Travel to Arathi Highlands to (31,28) to Northfold Manor. Look for a bug inside it, and use the net to catch it.

Travel to Desolace to (52,59) to the Kodo Graveyard. Look for a bug, and use the net to catch it.

Return to Amaryllis Webb with the bugs to retrieve the rune.

Travel to Desolace to start the Highway Robbery quest at the Extinguished Campfire (47, 54). Next, find Bibbly F'utzbuckle at (63, 39) in the same zone for the second quest. After that, travel to the Inn in Booty Bay and talk to Tokal on the first floor of the inn. Pick up the new quest from her, and buy her a Cherry Grog for the fourth quest.

Next you will be heading to the Arathi Highlands to find a row boat at (53,91). Interact with the boat and it will teleport you to where you can find Illari Duskfeather. Kill her and she will drop the Illari's Key that you need to open the Jewel-Encrusted Box that you have been carrying around throughout these quests. Open the box to loot the rune.